IL_4W2H_135
3D structure
- PDB id
- 4W2H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GC*GCAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4W2H_135 not in the Motif Atlas
- Geometric match to IL_7RQB_076
- Geometric discrepancy: 0.0705
- The information below is about IL_7RQB_076
- Detailed Annotation
- Bulged stacked bases
- Broad Annotation
- Bulged stacked bases
- Motif group
- IL_59677.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 19
Unit IDs
4W2H|1|BA|G|1955
4W2H|1|BA|C|1956
*
4W2H|1|BA|G|1986
4W2H|1|BA|C|1987
4W2H|1|BA|A|1988
4W2H|1|BA|C|1989
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AX
- Transfer RNA; tRNA
Coloring options: