IL_4W2H_215

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

4W2H|1|CA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_215 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.1278

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

4W2H|1|CA|U|1052
4W2H|1|CA|G|1053
4W2H|1|CA|C|1054
4W2H|1|CA|A|1055
4W2H|1|CA|U|1056
*
4W2H|1|CA|A|1204
4W2H|1|CA|U|1205
4W2H|1|CA|G|1206

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CC

30S Ribosomal Protein S3

Chain CJ

30S Ribosomal Protein S10

Chain CN

30S Ribosomal Protein S14