IL_4W2H_231

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_231 not in the Motif Atlas

Geometric match to IL_5VCI_002

Geometric discrepancy: 0.1317

The information below is about IL_5VCI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4W2H|1|CA|G|1405
4W2H|1|CA|U|1406
4W2H|1|CA|C|1407
*
4W2H|1|CA|G|1494
4W2H|1|CA|U|1495
4W2H|1|CA|C|1496

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CL

30S Ribosomal Protein S12

Chain DA

Large subunit ribosomal RNA; LSU rRNA