IL_4W2H_274

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

4W2H|1|DA|U|1142, 4W2H|1|DA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_274 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.0976

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4W2H|1|DA|C|1018
4W2H|1|DA|U|1019
4W2H|1|DA|A|1020
4W2H|1|DA|A|1021
4W2H|1|DA|G|1022
4W2H|1|DA|U|1023
4W2H|1|DA|G|1024
*
4W2H|1|DA|C|1140
4W2H|1|DA|U|1141
4W2H|1|DA|U|1142
4W2H|1|DA|A|1142|||A
4W2H|1|DA|A|1143
4W2H|1|DA|G|1144

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D9

50S Ribosomal Protein L36

Chain DN

50S Ribosomal Protein L13