IL_4W2H_310

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_310 not in the Motif Atlas

Homologous match to IL_5J7L_320

Geometric discrepancy: 0.0695

The information below is about IL_5J7L_320

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

4W2H|1|DA|C|2050
4W2H|1|DA|A|2051
4W2H|1|DA|G|2052
*
4W2H|1|DA|C|2617
4W2H|1|DA|G|2618

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D5

50S Ribosomal Protein L32

Chain DE

50S Ribosomal Protein L3