IL_4W2H_364

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_364 not in the Motif Atlas

Homologous match to IL_9DFE_112

Geometric discrepancy: 0.0757

The information below is about IL_9DFE_112

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

4W2H|1|BB|C|30
4W2H|1|BB|C|31
*
4W2H|1|BB|G|51
4W2H|1|BB|A|52
4W2H|1|BB|A|53
4W2H|1|BB|G|54

Current chains

Chain BB

5S Ribosomal RNA

Nearby chains

Chain BG

50S Ribosomal Protein L5

Chain BS

50S Ribosomal Protein L18