IL_4W2I_063

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCG,CGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2I_063 not in the Motif Atlas

Homologous match to IL_7VNV_001

Geometric discrepancy: 0.3655

The information below is about IL_7VNV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W2I|1|AW|C|3
4W2I|1|AW|C|4
4W2I|1|AW|G|5
*
4W2I|1|AW|C|68
4W2I|1|AW|G|69
4W2I|1|AW|G|70

Current chains

Chain AW

A/P-site tRNA

Nearby chains

Chain AX

Transfer RNA; tRNA

Chain BA

Large subunit ribosomal RNA; LSU rRNA