IL_4W2I_105

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

4W2I|1|BA|U|1250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2I_105 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.1476

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4W2I|1|BA|C|1247
4W2I|1|BA|G|1248
4W2I|1|BA|A|1249
4W2I|1|BA|U|1250
4W2I|1|BA|G|1251
*
4W2I|1|BA|U|1286
4W2I|1|BA|A|1287
4W2I|1|BA|A|1288
4W2I|1|BA|G|1289

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BF

50S Ribosomal Protein L4

Chain BP

50S Ribosomal Protein L15