IL_4W2I_108

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2I_108 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.0396

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4W2I|1|BA|A|1308
4W2I|1|BA|U|1309
4W2I|1|BA|G|1310
4W2I|1|BA|A|1311
4W2I|1|BA|G|1312
4W2I|1|BA|U|1313
4W2I|1|BA|A|1314
4W2I|1|BA|A|1315
*
4W2I|1|BA|U|2033
4W2I|1|BA|G|2034
4W2I|1|BA|A|2035
4W2I|1|BA|A|2036
4W2I|1|BA|A|2037
4W2I|1|BA|U|2038
4W2I|1|BA|U|2039

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B5

50S Ribosomal Protein L32

Chain BF

50S Ribosomal Protein L4

Chain BW

50S Ribosomal Protein L22