IL_4W2I_360

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGCUAGGGG*CUACCAAACC

Length

19 nucleotides

Bulged bases

4W2I|1|DA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W2I|1|DA|G|874
4W2I|1|DA|G|875
4W2I|1|DA|C|876
4W2I|1|DA|U|877
4W2I|1|DA|A|878
4W2I|1|DA|G|879
4W2I|1|DA|G|880
4W2I|1|DA|G|881
4W2I|1|DA|G|882
*
4W2I|1|DA|C|894
4W2I|1|DA|U|895
4W2I|1|DA|A|896
4W2I|1|DA|C|897
4W2I|1|DA|C|898
4W2I|1|DA|A|899
4W2I|1|DA|A|900
4W2I|1|DA|A|901
4W2I|1|DA|C|902
4W2I|1|DA|C|903

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain DQ

50S Ribosomal Protein L16

Chain DZ

50S Ribosomal Protein L25