IL_4W4G_060

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_060 not in the Motif Atlas

Homologous match to IL_4LFB_062

Geometric discrepancy: 0.0688

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4W4G|1|QA|C|1431
4W4G|1|QA|G|1432
4W4G|1|QA|A|1433
4W4G|1|QA|A|1434
4W4G|1|QA|G|1435
*
4W4G|1|QA|C|1466
4W4G|1|QA|G|1467
4W4G|1|QA|A|1468
4W4G|1|QA|G|1469

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20

Chain RA

Large subunit ribosomal RNA; LSU rRNA

Chain RT

50S ribosomal protein L19