IL_4W4G_068

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

4W4G|1|RA|G|101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_068 not in the Motif Atlas

Homologous match to IL_7RQB_004

Geometric discrepancy: 0.0811

The information below is about IL_7RQB_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.2

Basepair signature

cWW-tSS-L-tSH-L-R-R-cWW-L

Number of instances in this motif group

18

Unit IDs

4W4G|1|RA|G|81
4W4G|1|RA|G|82
4W4G|1|RA|G|83
4W4G|1|RA|A|84
4W4G|1|RA|G|85
*
4W4G|1|RA|C|97
4W4G|1|RA|G|98
4W4G|1|RA|U|99
4W4G|1|RA|G|101
4W4G|1|RA|G|102
4W4G|1|RA|A|103
4W4G|1|RA|U|104
4W4G|1|RA|C|105

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R2

50S ribosomal protein L29

Chain RY

50S ribosomal protein L24