3D structure

PDB id
4W4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GAC*GC
Length
5 nucleotides
Bulged bases
4W4G|1|RA|A|1220
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W4G_114 not in the Motif Atlas
Homologous match to IL_7RQB_048
Geometric discrepancy: 0.0714
The information below is about IL_7RQB_048
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_37497.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
118

Unit IDs

4W4G|1|RA|G|1219
4W4G|1|RA|A|1220
4W4G|1|RA|C|1221
*
4W4G|1|RA|G|1229|||A
4W4G|1|RA|C|1230

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RU
50S ribosomal protein L20
Chain RV
50S ribosomal protein L21

Coloring options:


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