3D structure

PDB id
4W4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
4W4G|1|RA|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W4G_134 not in the Motif Atlas
Homologous match to IL_7RQB_068
Geometric discrepancy: 0.058
The information below is about IL_7RQB_068
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_65969.2
Basepair signature
cWW-tSH-tSH-tHH-tHS-cWW
Number of instances in this motif group
8

Unit IDs

4W4G|1|RA|C|1686
4W4G|1|RA|G|1687
4W4G|1|RA|U|1688
4W4G|1|RA|A|1689
4W4G|1|RA|A|1690
4W4G|1|RA|C|1691
*
4W4G|1|RA|G|1696
4W4G|1|RA|G|1697
4W4G|1|RA|A|1698
4W4G|1|RA|G|1699
4W4G|1|RA|A|1700
4W4G|1|RA|A|1701
4W4G|1|RA|G|1702

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA
Chain RD
50S ribosomal protein L2

Coloring options:


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