IL_4W4G_140

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_140 not in the Motif Atlas

Homologous match to IL_7A0S_069

Geometric discrepancy: 0.188

The information below is about IL_7A0S_069

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4W4G|1|RA|U|1851
4W4G|1|RA|C|1852
4W4G|1|RA|A|1853
4W4G|1|RA|A|1854
4W4G|1|RA|G|1855
*
4W4G|1|RA|C|1887
4W4G|1|RA|G|1888
4W4G|1|RA|A|1889
4W4G|1|RA|A|1890
4W4G|1|RA|G|1891

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QW

Transfer RNA; tRNA

Chain R1

50S ribosomal protein L28