IL_4W4G_163

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

4W4G|1|RA|G|2576, 4W4G|1|RA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_163 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.0747

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

4W4G|1|RA|C|2510
4W4G|1|RA|U|2511
4W4G|1|RA|C|2512
*
4W4G|1|RA|G|2574
4W4G|1|RA|C|2575
4W4G|1|RA|G|2576
4W4G|1|RA|A|2577
4W4G|1|RA|G|2578

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R5

50S ribosomal protein L32

Chain RE

50S ribosomal protein L3