3D structure

PDB id
4W4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CUAGUAC*GGACCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W4G_168 not in the Motif Atlas
Homologous match to IL_4WF9_100
Geometric discrepancy: 0.1541
The information below is about IL_4WF9_100
Detailed Annotation
Sarcin-Ricin target in LSU H95; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.4
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

4W4G|1|RA|C|2652
4W4G|1|RA|U|2653
4W4G|1|RA|A|2654
4W4G|1|RA|G|2655
4W4G|1|RA|U|2656
4W4G|1|RA|A|2657
4W4G|1|RA|C|2658
*
4W4G|1|RA|G|2663
4W4G|1|RA|G|2664
4W4G|1|RA|A|2665
4W4G|1|RA|C|2666
4W4G|1|RA|C|2667
4W4G|1|RA|G|2668

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RH
50S ribosomal protein L6

Coloring options:


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