3D structure

PDB id
4W4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CUGC*GAGGAAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W4G_229 not in the Motif Atlas
Homologous match to IL_5J7L_053
Geometric discrepancy: 0.2169
The information below is about IL_5J7L_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42032.1
Basepair signature
cWW-cSH-cWW-tWH-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

4W4G|1|XA|C|1158
4W4G|1|XA|U|1159
4W4G|1|XA|G|1160
4W4G|1|XA|C|1161
*
4W4G|1|XA|G|1175
4W4G|1|XA|A|1176
4W4G|1|XA|G|1177
4W4G|1|XA|G|1178
4W4G|1|XA|A|1179
4W4G|1|XA|A|1180
4W4G|1|XA|G|1181

Current chains

Chain XA
16S rRNA

Nearby chains

Chain QJ
30S ribosomal protein S10
Chain XB
30S ribosomal protein S2
Chain XI
30S ribosomal protein S9

Coloring options:


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