IL_4W4G_268

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGA*UAACC

Length

8 nucleotides

Bulged bases

4W4G|1|YA|G|776, 4W4G|1|YA|A|788, 4W4G|1|YA|A|789, 4W4G|1|YA|C|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_268 not in the Motif Atlas

Geometric match to IL_7RQB_023

Geometric discrepancy: 0.0744

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

4W4G|1|YA|G|775
4W4G|1|YA|G|776
4W4G|1|YA|A|777
*
4W4G|1|YA|U|787
4W4G|1|YA|A|788
4W4G|1|YA|A|789
4W4G|1|YA|C|790
4W4G|1|YA|C|791

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y7

50S ribosomal protein L34

Chain YD

50S ribosomal protein L2

Chain YF

50S ribosomal protein L4

Chain YW

50S ribosomal protein L22