IL_4W4G_284

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

4W4G|1|YA|U|1142, 4W4G|1|YA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_284 not in the Motif Atlas

Geometric match to IL_7RQB_039

Geometric discrepancy: 0.0802

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4W4G|1|YA|C|1018
4W4G|1|YA|U|1019
4W4G|1|YA|A|1020
4W4G|1|YA|A|1021
4W4G|1|YA|G|1022
4W4G|1|YA|U|1023
4W4G|1|YA|G|1024
*
4W4G|1|YA|C|1140
4W4G|1|YA|U|1141
4W4G|1|YA|U|1142
4W4G|1|YA|A|1142|||A
4W4G|1|YA|A|1143
4W4G|1|YA|G|1144

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36

Chain YB

5S ribosomal RNA; 5S rRNA

Chain YH

50S ribosomal protein L6

Chain YN

50S ribosomal protein L13