IL_4W4G_292

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

4W4G|1|YA|U|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_292 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.1523

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4W4G|1|YA|C|1202
4W4G|1|YA|G|1203
4W4G|1|YA|A|1204
4W4G|1|YA|U|1205
4W4G|1|YA|G|1206
*
4W4G|1|YA|U|1240
4W4G|1|YA|A|1241
4W4G|1|YA|A|1242
4W4G|1|YA|G|1243

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YF

50S ribosomal protein L4

Chain YP

50S ribosomal protein L15