IL_4W4G_329

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUG*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_329 not in the Motif Atlas

Homologous match to IL_7RQB_083

Geometric discrepancy: 0.0673

The information below is about IL_7RQB_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

4W4G|1|YA|C|2085
4W4G|1|YA|U|2086
4W4G|1|YA|G|2087
*
4W4G|1|YA|U|2232
4W4G|1|YA|U|2233
4W4G|1|YA|G|2234

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XW

Transfer RNA; tRNA

Chain Y1

50S ribosomal protein L28

Chain YD

50S ribosomal protein L2