IL_4W4G_375

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_375 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.0603

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4W4G|1|XA|G|673
4W4G|1|XA|G|674
4W4G|1|XA|A|675
4W4G|1|XA|A|676
4W4G|1|XA|U|677
*
4W4G|1|XA|G|713
4W4G|1|XA|G|714
4W4G|1|XA|A|715
4W4G|1|XA|A|716
4W4G|1|XA|C|717

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XF

30S ribosomal protein S6

Chain XK

30S ribosomal protein S11

Chain XR

30S ribosomal protein S18

Chain YD

50S ribosomal protein L2