IL_4WCE_009

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

CUUAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WCE_009 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.0598

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4WCE|1|X|C|241
4WCE|1|X|U|242
4WCE|1|X|U|243
4WCE|1|X|A|244
4WCE|1|X|G|245
4WCE|1|X|U|246
4WCE|1|X|A|247
4WCE|1|X|G|248
*
4WCE|1|X|C|256
4WCE|1|X|G|257
4WCE|1|X|A|258
4WCE|1|X|A|259
4WCE|1|X|A|260
4WCE|1|X|C|261
4WCE|1|X|G|262

Current chains

Chain X

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15