IL_4WCE_045

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

GAU*GAC

Length

6 nucleotides

Bulged bases

4WCE|1|X|A|1258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WCE_045 not in the Motif Atlas

Homologous match to IL_4WF9_047

Geometric discrepancy: 0.0729

The information below is about IL_4WF9_047

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4WCE|1|X|G|1257
4WCE|1|X|A|1258
4WCE|1|X|U|1259
*
4WCE|1|X|G|1266
4WCE|1|X|A|1267
4WCE|1|X|C|1268

Current chains

Chain X

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21