IL_4WCE_046

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

GUGAGUAG*UGAAAUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WCE_046 not in the Motif Atlas

Homologous match to IL_4WF9_048

Geometric discrepancy: 0.0587

The information below is about IL_4WF9_048

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4WCE|1|X|G|1300
4WCE|1|X|U|1301
4WCE|1|X|G|1302
4WCE|1|X|A|1303
4WCE|1|X|G|1304
4WCE|1|X|U|1305
4WCE|1|X|A|1306
4WCE|1|X|G|1307
*
4WCE|1|X|U|2038
4WCE|1|X|G|2039
4WCE|1|X|A|2040
4WCE|1|X|A|2041
4WCE|1|X|A|2042
4WCE|1|X|U|2043
4WCE|1|X|C|2044

Current chains

Chain X

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32