IL_4WCE_050

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

UGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WCE_050 not in the Motif Atlas

Homologous match to IL_4WF9_052

Geometric discrepancy: 0.1114

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4WCE|1|X|U|1394
4WCE|1|X|G|1395
4WCE|1|X|A|1396
4WCE|1|X|G|1397
4WCE|1|X|G|1398
*
4WCE|1|X|C|1407
4WCE|1|X|G|1408
4WCE|1|X|U|1409
4WCE|1|X|A|1410
4WCE|1|X|G|1411

Current chains

Chain X

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2