IL_4WCE_066

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4WCE|1|X|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WCE_066 not in the Motif Atlas

Geometric match to IL_4WF9_066

Geometric discrepancy: 0.0817

The information below is about IL_4WF9_066

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4WCE|1|X|C|1730
4WCE|1|X|G|1731
4WCE|1|X|U|1732
4WCE|1|X|A|1733
4WCE|1|X|A|1734
4WCE|1|X|C|1735
*
4WCE|1|X|G|1740
4WCE|1|X|G|1741
4WCE|1|X|A|1742
4WCE|1|X|G|1743
4WCE|1|X|A|1744
4WCE|1|X|A|1745
4WCE|1|X|G|1746

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2