IL_4WCE_069

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

4WCE|1|X|U|1828, 4WCE|1|X|U|1843, 4WCE|1|X|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WCE_069 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.0688

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4WCE|1|X|U|1825
4WCE|1|X|G|1826
4WCE|1|X|C|1827
4WCE|1|X|U|1828
4WCE|1|X|A|1829
4WCE|1|X|A|1830
4WCE|1|X|A|1831
*
4WCE|1|X|U|1840
4WCE|1|X|G|1841
4WCE|1|X|A|1842
4WCE|1|X|U|1843
4WCE|1|X|G|1844
4WCE|1|X|U|1845
4WCE|1|X|A|1846
4WCE|1|X|U|1847
4WCE|1|X|A|1848

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2