IL_4WCE_089

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WCE_089 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.0855

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4WCE|1|X|C|2377
4WCE|1|X|G|2378
4WCE|1|X|A|2379
4WCE|1|X|G|2380
*
4WCE|1|X|C|2391
4WCE|1|X|G|2392
4WCE|1|X|A|2393
4WCE|1|X|G|2394

Current chains

Chain X

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain T

50S ribosomal protein L27