IL_4WCE_094

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

4WCE|1|X|U|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WCE_094 not in the Motif Atlas

Homologous match to IL_4WF9_092

Geometric discrepancy: 0.0658

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

4WCE|1|X|A|2486
4WCE|1|X|U|2487
4WCE|1|X|C|2488
*
4WCE|1|X|G|2516
4WCE|1|X|G|2517
4WCE|1|X|U|2518
4WCE|1|X|U|2519
4WCE|1|X|U|2520

Current chains

Chain X

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L16