IL_4WCE_117
3D structure
- PDB id
- 4WCE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.53 Å
Loop
- Sequence
- UUCCC*GAACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WCE_117 not in the Motif Atlas
- Geometric match to IL_4WF9_115
- Geometric discrepancy: 0.1063
- The information below is about IL_4WF9_115
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.12
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 12
Unit IDs
4WCE|1|Y|U|32
4WCE|1|Y|U|33
4WCE|1|Y|C|34
4WCE|1|Y|C|35
4WCE|1|Y|C|36
*
4WCE|1|Y|G|42
4WCE|1|Y|A|43
4WCE|1|Y|A|44
4WCE|1|Y|C|45
4WCE|1|Y|A|46
Current chains
- Chain Y
- 5S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L5
- Chain L
- 50S ribosomal protein L18
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: