IL_4WCE_120

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WCE_120 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0582

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

4WCE|1|X|G|1710
4WCE|1|X|G|1711
4WCE|1|X|A|1712
4WCE|1|X|A|1713
4WCE|1|X|C|1714
4WCE|1|X|U|1715
4WCE|1|X|C|1716
4WCE|1|X|G|1717
4WCE|1|X|G|1718
*
4WCE|1|X|C|2017
4WCE|1|X|U|2018
4WCE|1|X|G|2019
4WCE|1|X|U|2020
4WCE|1|X|C|2021

Current chains

Chain X

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14