IL_4WCS_002

3D structure

PDB id

4WCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

C(1MA)C*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WCS_002 not in the Motif Atlas

Geometric match to IL_4ZC7_003

Geometric discrepancy: 0.1896

The information below is about IL_4ZC7_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31531.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

13

Unit IDs

4WCS|1|A|C|7
4WCS|1|A|1MA|8
4WCS|1|A|C|9
*
4WCS|1|B|G|39
4WCS|1|B|A|40
4WCS|1|B|A|41
4WCS|1|B|G|42

Current chains

Chain A

RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')

Chain B

RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')

Nearby chains