IL_4WF1_026

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

4WF1|1|AA|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WF1_026 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0787

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

4WF1|1|AA|C|569
4WF1|1|AA|G|570
4WF1|1|AA|U|571
4WF1|1|AA|A|572
4WF1|1|AA|A|573
4WF1|1|AA|A|574
4WF1|1|AA|G|575
*
4WF1|1|AA|C|880
4WF1|1|AA|G|881

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17