IL_4WF1_055

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

AUACAAAG*CAUAAAGU

Length

16 nucleotides

Bulged bases

4WF1|1|AA|U|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WF1|1|AA|A|1246
4WF1|1|AA|U|1247
4WF1|1|AA|A|1248
4WF1|1|AA|C|1249
4WF1|1|AA|A|1250
4WF1|1|AA|A|1251
4WF1|1|AA|A|1252
4WF1|1|AA|G|1253
*
4WF1|1|AA|C|1284
4WF1|1|AA|A|1285
4WF1|1|AA|U|1286
4WF1|1|AA|A|1287
4WF1|1|AA|A|1288
4WF1|1|AA|A|1289
4WF1|1|AA|G|1290
4WF1|1|AA|U|1291

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14