IL_4WF1_110

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

4WF1|1|BA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WF1_110 not in the Motif Atlas

Geometric match to IL_6IV9_001

Geometric discrepancy: 0.3483

The information below is about IL_6IV9_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

4WF1|1|BA|G|1087
4WF1|1|BA|A|1088
4WF1|1|BA|A|1089
4WF1|1|BA|A|1090
*
4WF1|1|BA|U|1101
4WF1|1|BA|C|1102

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BI

50S ribosomal protein L11