IL_4WF1_153

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

AUGUGUAGGAUAGGUG*CACCCUU

Length

23 nucleotides

Bulged bases

4WF1|1|BA|U|2111, 4WF1|1|BA|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WF1|1|BA|A|2108
4WF1|1|BA|U|2109
4WF1|1|BA|G|2110
4WF1|1|BA|U|2111
4WF1|1|BA|G|2112
4WF1|1|BA|U|2113
4WF1|1|BA|A|2114
4WF1|1|BA|G|2115
4WF1|1|BA|G|2116
4WF1|1|BA|A|2117
4WF1|1|BA|U|2118
4WF1|1|BA|A|2119
4WF1|1|BA|G|2120
4WF1|1|BA|G|2121
4WF1|1|BA|U|2122
4WF1|1|BA|G|2123
*
4WF1|1|BA|C|2175
4WF1|1|BA|A|2176
4WF1|1|BA|C|2177
4WF1|1|BA|C|2178
4WF1|1|BA|C|2179
4WF1|1|BA|U|2180
4WF1|1|BA|U|2181

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

50S ribosomal protein L1