IL_4WF1_156

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GUGGAC*GUCUGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WF1_156 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3537

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4WF1|1|BA|G|2138
4WF1|1|BA|U|2139
4WF1|1|BA|G|2140
4WF1|1|BA|G|2141
4WF1|1|BA|A|2142
4WF1|1|BA|C|2143
*
4WF1|1|BA|G|2148
4WF1|1|BA|U|2149
4WF1|1|BA|C|2150
4WF1|1|BA|U|2151
4WF1|1|BA|G|2152
4WF1|1|BA|C|2153

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AK

30S ribosomal protein S11