IL_4WF1_233

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

UCA*UGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UCA,UGA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WF1_233 not in the Motif Atlas

Geometric match to IL_4LFB_010

Geometric discrepancy: 0.1767

The information below is about IL_4LFB_010

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4WF1|1|CA|U|1010
4WF1|1|CA|C|1011
4WF1|1|CA|A|1012
*
4WF1|1|CA|U|1017
4WF1|1|CA|G|1018
4WF1|1|CA|A|1019

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CN

30S ribosomal protein S14

Chain CS

30S ribosomal protein S19