IL_4WF1_262

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WF1_262 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.1408

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4WF1|1|DA|G|188
4WF1|1|DA|G|189
4WF1|1|DA|A|190
4WF1|1|DA|A|191
4WF1|1|DA|C|192
4WF1|1|DA|U|193
4WF1|1|DA|G|194
*
4WF1|1|DA|C|201
4WF1|1|DA|U|202
4WF1|1|DA|A|203
4WF1|1|DA|A|204
4WF1|1|DA|G|205
4WF1|1|DA|U|206
4WF1|1|DA|A|207
4WF1|1|DA|C|208

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L35

Chain DL

50S ribosomal protein L15

Chain DX

50S ribosomal protein L28