IL_4WF1_310

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

4WF1|1|DA|U|1584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WF1_310 not in the Motif Atlas

Homologous match to IL_5J7L_294

Geometric discrepancy: 0.1663

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

4WF1|1|DA|U|1415
4WF1|1|DA|G|1416
*
4WF1|1|DA|C|1582
4WF1|1|DA|A|1583
4WF1|1|DA|U|1584
4WF1|1|DA|C|1585
4WF1|1|DA|A|1586
4WF1|1|DA|G|1587

Current chains

Chain DA

23S rRNA

Nearby chains