IL_4WF1_329

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

4WF1|1|DA|A|1981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WF1_329 not in the Motif Atlas

Geometric match to IL_4V9F_064

Geometric discrepancy: 0.121

The information below is about IL_4V9F_064

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

4WF1|1|DA|G|1770
4WF1|1|DA|C|1771
*
4WF1|1|DA|G|1980
4WF1|1|DA|A|1981
4WF1|1|DA|U|1982

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2