IL_4WF1_387

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

UGAGCCUUGAUGUGUAGGAUAGGUG*CACCCUUUAAUGUUUG

Length

41 nucleotides

Bulged bases

4WF1|1|BA|U|2111, 4WF1|1|BA|G|2116, 4WF1|1|BA|U|2118, 4WF1|1|BA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WF1|1|BA|U|2099
4WF1|1|BA|G|2100
4WF1|1|BA|A|2101
4WF1|1|BA|G|2102
4WF1|1|BA|C|2103
4WF1|1|BA|C|2104
4WF1|1|BA|U|2105
4WF1|1|BA|U|2106
4WF1|1|BA|G|2107
4WF1|1|BA|A|2108
4WF1|1|BA|U|2109
4WF1|1|BA|G|2110
4WF1|1|BA|U|2111
4WF1|1|BA|G|2112
4WF1|1|BA|U|2113
4WF1|1|BA|A|2114
4WF1|1|BA|G|2115
4WF1|1|BA|G|2116
4WF1|1|BA|A|2117
4WF1|1|BA|U|2118
4WF1|1|BA|A|2119
4WF1|1|BA|G|2120
4WF1|1|BA|G|2121
4WF1|1|BA|U|2122
4WF1|1|BA|G|2123
*
4WF1|1|BA|C|2175
4WF1|1|BA|A|2176
4WF1|1|BA|C|2177
4WF1|1|BA|C|2178
4WF1|1|BA|C|2179
4WF1|1|BA|U|2180
4WF1|1|BA|U|2181
4WF1|1|BA|U|2182
4WF1|1|BA|A|2183
4WF1|1|BA|A|2184
4WF1|1|BA|U|2185
4WF1|1|BA|G|2186
4WF1|1|BA|U|2187
4WF1|1|BA|U|2188
4WF1|1|BA|U|2189
4WF1|1|BA|G|2190

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

50S ribosomal protein L1

Chain BH

50S ribosomal protein L9