IL_4WF1_405

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GGGACGG*UCCAGGAAAAGC

Length

19 nucleotides

Bulged bases

4WF1|1|DA|A|1566

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WF1|1|DA|G|1424
4WF1|1|DA|G|1425
4WF1|1|DA|G|1426
4WF1|1|DA|A|1427
4WF1|1|DA|C|1428
4WF1|1|DA|G|1429
4WF1|1|DA|G|1430
*
4WF1|1|DA|U|1563
4WF1|1|DA|C|1564
4WF1|1|DA|C|1565
4WF1|1|DA|A|1566
4WF1|1|DA|G|1567
4WF1|1|DA|G|1568
4WF1|1|DA|A|1569
4WF1|1|DA|A|1570
4WF1|1|DA|A|1571
4WF1|1|DA|A|1572
4WF1|1|DA|G|1573
4WF1|1|DA|C|1574

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2