IL_4WF1_411

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GGAGGCUUUGAAG*UGGAGCCGACCUUGAAAUAC

Length

33 nucleotides

Bulged bases

4WF1|1|DA|U|2131, 4WF1|1|DA|U|2132, 4WF1|1|DA|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WF1|1|DA|G|2124
4WF1|1|DA|G|2125
4WF1|1|DA|A|2126
4WF1|1|DA|G|2127
4WF1|1|DA|G|2128
4WF1|1|DA|C|2129
4WF1|1|DA|U|2130
4WF1|1|DA|U|2131
4WF1|1|DA|U|2132
4WF1|1|DA|G|2133
4WF1|1|DA|A|2134
4WF1|1|DA|A|2135
4WF1|1|DA|G|2136
*
4WF1|1|DA|U|2155
4WF1|1|DA|G|2156
4WF1|1|DA|G|2157
4WF1|1|DA|A|2158
4WF1|1|DA|G|2159
4WF1|1|DA|C|2160
4WF1|1|DA|C|2161
4WF1|1|DA|G|2162
4WF1|1|DA|A|2163
4WF1|1|DA|C|2164
4WF1|1|DA|C|2165
4WF1|1|DA|U|2166
4WF1|1|DA|U|2167
4WF1|1|DA|G|2168
4WF1|1|DA|A|2169
4WF1|1|DA|A|2170
4WF1|1|DA|A|2171
4WF1|1|DA|U|2172
4WF1|1|DA|A|2173
4WF1|1|DA|C|2174

Current chains

Chain DA

23S rRNA

Nearby chains