IL_4WFA_006

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CGAU*AUCAG

Length

9 nucleotides

Bulged bases

4WFA|1|X|A|176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_006 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.3307

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

4WFA|1|X|C|152
4WFA|1|X|G|153
4WFA|1|X|A|154
4WFA|1|X|U|155
*
4WFA|1|X|A|173
4WFA|1|X|U|174
4WFA|1|X|C|175
4WFA|1|X|A|176
4WFA|1|X|G|177

Current chains

Chain X

23S rRNA

Nearby chains