IL_4WFA_009

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CUUAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_009 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.0659

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4WFA|1|X|C|241
4WFA|1|X|U|242
4WFA|1|X|U|243
4WFA|1|X|A|244
4WFA|1|X|G|245
4WFA|1|X|U|246
4WFA|1|X|A|247
4WFA|1|X|G|248
*
4WFA|1|X|C|256
4WFA|1|X|G|257
4WFA|1|X|A|258
4WFA|1|X|A|259
4WFA|1|X|A|260
4WFA|1|X|C|261
4WFA|1|X|G|262

Current chains

Chain X

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15