IL_4WFA_023

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_023 not in the Motif Atlas

Geometric match to IL_4WF9_024

Geometric discrepancy: 0.0892

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

4WFA|1|X|U|748
4WFA|1|X|G|749
4WFA|1|X|A|750
4WFA|1|X|A|751
4WFA|1|X|G|752
*
4WFA|1|X|U|769
4WFA|1|X|G|770
4WFA|1|X|G|771
4WFA|1|X|A|772
4WFA|1|X|G|773

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2