IL_4WFA_036

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UCCCAAAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_036 not in the Motif Atlas

Homologous match to IL_4WF9_037

Geometric discrepancy: 0.0786

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4WFA|1|X|U|1048
4WFA|1|X|C|1049
4WFA|1|X|C|1050
4WFA|1|X|C|1051
4WFA|1|X|A|1052
4WFA|1|X|A|1053
4WFA|1|X|A|1054
4WFA|1|X|A|1055
*
4WFA|1|X|U|1194
4WFA|1|X|A|1195

Current chains

Chain X

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20